PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096575.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 418aa    MW: 44515.8 Da    PI: 7.7889
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.3e-39105219489
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......... 88 
                      k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  ++s +ss+ + s++         
  XP_011096575.1 105 VKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfl 199
                     5899***************************************************************9998777777777744444555555666 PP

             TCP  89 ...................k 89 
                                         
  XP_011096575.1 200 gsatgmlgfhhqitsnthfG 219
                     66666666543333333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.5E-38109230IPR005333Transcription factor, TCP
PROSITE profilePS5136927.954109163IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEFMEPHPKN QGAAANNSNS DHHEAASSLQ LVSPHHHQSQ PEPGSGSGPA PPHGPFMGSI  60
SMQQSRNLAH SSSASSTTNH PSTTATTTNN NNSSNDNNSA ANKAVKKPSK DRHTKVDGRG  120
RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSTLNVSL  180
RSSGTTISAP PSKSAPLFLG SATGMLGFHH QITSNTHFGQ DPDENYIKKR FREDTSGATS  240
PKSGRTSTVQ DQETGSDPKS GSSQPSNFIP APAMWAVAPA AANVGNAFWM LPVTGSAATA  300
TAGQPEWQYK APSMQRIGGF EFPGAGRFSP VQLGSGQLGS MVLQQPQPPS AQQLGLGVTE  360
TNMGMLASMN AYNSSNSRID LGMNLEHHHH HHHHQHHQHH QNQPQQSDSG DENPKDSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0347405e-58KJ034740.1 Sesamum indicum clone TilSSR_5941 microsatellite sesame_5941 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096575.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP23
SwissprotQ9LQF02e-70TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A022Q8E50.0A0A022Q8E5_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000239811e-151(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.11e-65TCP family protein